Transcript 43914 | MetamORF

Transcript

ID CARD

MetamORF ID

43914

ENSMUST00000155898

Name

Psma7-207

Strand

Biotype

processed_transcript

Start-end positions

180039296-180042385

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:26444

Aliases

C6-I,
ENSMUSG00000027566, MGI:1347070, NCBI:26444,
OFF:Psma7, Psma7

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
15351	66	ATG ...	MKE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
15407	129	GTG ...	VFE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
14870	111	TTG ...	LLF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
16126	132	TTG ...	LVF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
14965	87	GTG ...	VAK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
970228	168	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
16066	102	TTG ...	LVW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
47442	195	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
965770	93	ACG ...	TTA ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
48103	63	GTG ...	VEY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF, Testis
48593	102	GTG ...	VEK ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
16033	108	TTG ...	LFL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
16035	150	ATG ...	MYF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
967768	99	ATC ...	ITV ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
964069	63	ACG ...	TAT ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
1216686	159	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
969205	39	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
16042	99	GTG ...	VWK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
1209019	30	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
970344	222	ACG ...	TTA ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
971150	192	ACG ...	TAT ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF

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