Transcript 55956 | MetamORF

Transcript

ID CARD

MetamORF ID

55956

ENSMUST00000126706

Name

Psip1-204

Strand

Biotype

protein_coding

Start-end positions

83461871-83464964

CDS Start-stop positions

83462138-

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:101739

Aliases

AA408851,
AU015605, Dfs70, ENSMUSG00000028484,
Ledgfa, Ledgfb, MGI:2142116,
NCBI:101739, OFF:Psip1, Psip1,
Psip2

Chr 4

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56374	42	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Testis
55955	42	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Testis
1226614	39	ATT ...	IQK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1231993	87	ATT ...	IQK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1231279	30	ACG ...	TQA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	E14
1230543	30	ACG ...	TKT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
61306	90	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Testis
1232330	78	ACG ...	TKT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
1233792	69	ATC ...	IGN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
1229890	57	ATC ...	IGN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
59040	63	CTG ...	LEI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Testis
1226592	39	AGG ...	RNK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14

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