Transcript 91973 | MetamORF

Transcript

ID CARD

MetamORF ID

91973

ENSMUST00000162053

Name

Psat1-205

Strand

Biotype

protein_coding

Start-end positions

15905127-15924622

CDS Start-stop positions

15906046-15924354

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:107272

Aliases

D8Ertd814e,
ENSMUSG00000024640, EPIP, MGI:2183441,
NCBI:107272, OFF:Psat1, PSA,
Psat, Psat1

Chr 19

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409171	96	TTG ...	LTS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
490543	36	CTG ...	LCK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
489404	33	GTG ...	VGL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
1201344	141	ATG ...	MTC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
43124	132	CTG ...	LGT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
43386	60	TTG ...	LII ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
43236	201	TTG ...	LSG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
401888	72	CTG ...	LEP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
43563	192	ATG ...	MTC ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
92069	114	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
1545356	99	TTG ...	LTT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
403118	60	GTG ...	VPL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell, v6-5
806870	201	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
489630	36	TTG ...	LPR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain
410727	39	ATG ...	MYA ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1634280	81	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
409150	57	GTG ...	VTC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
1500333	150	TTG ...	LSG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
43697	150	TTG ...	LTT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
92111	198	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
409396	213	TTG ...	LST ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
405560	51	GTG ...	VTC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
406101	42	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell, v6-5
488541	45	TTG ...	LYK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
403622	90	TTG ...	LTS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
410430	126	GTG ...	VQT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
487523	72	ATG ...	MDQ ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
404106	132	ATG ...	MYT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
410707	84	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
409804	69	ATG ...	MRS ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
91972	138	ATG ...	MYT ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
402660	120	GTG ...	VQT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
402332	57	TTG ...	LAT ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell, v6-5
404316	78	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
408016	108	CTG ...	LCT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
402693	33	CTG ...	LRK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell

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