Transcript 41530 | MetamORF

Transcript

ID CARD

MetamORF ID

41530

ENSMUST00000159264

Name

Psat1-202

Strand

Biotype

processed_transcript

Start-end positions

15916839-15918337

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:107272

Aliases

D8Ertd814e,
ENSMUSG00000024640, EPIP, MGI:2183441,
NCBI:107272, OFF:Psat1, PSA,
Psat, Psat1

Chr 19

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
402660	120	GTG ...	VQT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
1545056	255	CTG ...	LIG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1205640	279	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1205460	249	ACG ...	TVN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1205560	261	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
401888	72	CTG ...	LEP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
404106	132	ATG ...	MYT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
43363	246	GTG ...	VNI ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1545198	246	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
491759	192	TTG ...	LEV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, R1E, Spleen_B_cell, v6-5
490543	36	CTG ...	LCK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
491390	207	TTG ...	LST ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, R1E, Spleen_B_cell, v6-5
41529	159	GTG ...	VHG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
43232	300	GTG ...	VTG ...	Ribo-seq	GTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1545268	150	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
41953	150	GTG ...	VEF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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