Transcript 127086

Transcript

ID CARD

MetamORF ID

127086

ENSMUST00000183011

Name

Prrc2c-211

Strand

Biotype

protein_coding

Start-end positions

162710367-162740404

CDS Start-stop positions

-162724815

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:226562

Aliases

1810043M20Rik,
9630039I18Rik, A630006J20, Bat2d,
Bat2d1, Bat2l2, E130112L15Rik,
ENSMUSG00000040225, MGI:1913754, mKIAA1096,
NCBI:226562, OFF:Prrc2c, Prrc2c,
Prrc3

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
130823	174	ATG ...	MQH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
90482	54	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain
127085	294	TTG ...	LYA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
24085	87	ATG ...	MSF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	Brain
410984	54	GTG ...	VRI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
18979	69	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
139062	186	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
51008	63	CTG ...	LIR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
141694	261	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain

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