Transcript 23008 | MetamORF

Transcript

ID CARD

MetamORF ID

23008

ENSMUST00000140917

Name

Prpsap1-204

Strand

Biotype

processed_transcript

Start-end positions

116471299-116478320

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:67763

Aliases

5730409F23Rik,
ENSMUSG00000015869, MGI:1915013, NCBI:67763,
OFF:Prpsap1, PAP39, Prpsap1

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
301631	33	ATG ...	MNF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
91573	174	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
20588	153	GTG ...	VTN ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
23007	207	CTG ...	LSA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, R1E, Testis, v6-5
20079	156	GTG ...	VVT ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
305576	42	CTG ...	LSL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
296891	45	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
452977	42	TTG ...	LMT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
648056	66	ATG ...	MES ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1601796	78	TTG ...	LIV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
303745	90	GTG ...	VYR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
450851	51	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
1293216	219	ACG ...	THG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
294594	63	GTG ...	VLT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
20157	84	CTG ...	LIL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
304220	48	ATG ...	MSW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
91036	159	GTG ...	VVV ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
22550	288	GTG ...	VES ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
22742	258	CTG ...	LKE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, R1E
453419	39	ATG ...	MTW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
17641	96	GTG ...	VDI ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
1339797	30	CTG ...	LKG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
292026	90	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell

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