Transcript 16486 | MetamORF

Transcript

ID CARD

MetamORF ID

16486

ENSMUST00000076313

Name

Prpf40a-201

Strand

Biotype

protein_coding

Start-end positions

53134704-53191225

CDS Start-stop positions

53139178-53191187

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:56194

Aliases

2810012K09Rik,
ENSMUSG00000061136, FBP-11, FBP11,
Fnbp11, Fnbp3, MGI:1860512,
NCBI:56194, OFF:Prpf40a, Prpf40a

Chr 2

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
743836	138	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
98286	117	CTG ...	LNE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil
736517	63	TTG ...	LIF ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
1055997	36	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil, v6-5
1366119	39	ATG ...	MSA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1055777	33	CTG ...	LSG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
1365717	48	ATG ...	MKM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
727801	48	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
814987	156	GTG ...	VIY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1053666	36	ATG ...	MLE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
730030	42	TTG ...	LKI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil
1165945	39	GTG ...	VNV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
412082	45	AAG ...	KPV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
744888	111	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
741488	237	CTG ...	LKQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
108038	78	GTG ...	VKK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC
1367391	114	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1052874	33	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
811384	96	GTG ...	VKG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, R1E
1372755	75	ATG ...	MFC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
745610	165	ATG ...	MGS ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
1548119	66	ATG ...	MHQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
813935	90	ATG ...	MNV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC
815933	45	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
746416	36	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, v6-5
1371983	207	GTG ...	VFV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1162709	33	TTG ...	LDG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
728159	33	ATG ...	MGA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
743480	111	CTG ...	LTF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil
742824	81	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC
814128	189	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
729296	60	CTG ...	LSK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
1777494	42	ATG ...	MFC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
731869	48	TTG ...	LGR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
727717	129	GTG ...	VRK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
746538	261	ATG ...	MEG ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, v6-5
742499	39	ATG ...	MLE ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil, v6-5
728468	69	CTG ...	LHL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC
731036	60	TTG ...	LTI ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
746937	216	CTG ...	LYQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
743401	159	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
121844	144	CTG ...	LNE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
16485	105	GTG ...	VKK ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
100755	33	GTG ...	VRE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
815084	75	TTG ...	LKI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
971559	147	ATA ...	ILN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
816429	66	TTG ...	LKD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1371086	261	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1680414	93	ATG ...	MPI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1505338	60	GTG ...	VNI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
814758	39	CTG ...	LEV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
745978	264	CTG ...	LME ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
815067	207	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1372258	51	TTG ...	LSF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
738488	45	ATG ...	MLK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil
743652	144	CTG ...	LIP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
814806	42	TTG ...	LLE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
816211	39	ATG ...	MKS ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC
1366730	117	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
732460	108	ATG ...	MPI ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
744686	258	TTG ...	LTF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF
1170592	126	ATG ...	MVT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5

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