Transcript 367835

Transcript

ID CARD

MetamORF ID

367835

ENSMUST00000127502

Name

Pros1-202

Strand

Biotype

processed_transcript

Start-end positions

62921467-62928390

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:19128

Aliases

AW214361,
ENSMUSG00000022912, MGI:1095733, NCBI:19128,
OFF:Pros1, Pros1

Chr 16

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
374419	129	TTG ...	LNI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, v6-5
698952	213	TTG ...	LDK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Liver, MEF, NSC, v6-5
699822	282	CTG ...	LEL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Liver, MEF, NSC, v6-5
368209	93	GTG ...	VQL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
374066	81	CTG ...	LDE ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, NSC, v6-5
374213	90	ATG ...	MDW ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF
371649	201	CTG ...	LKC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
697371	87	TTG ...	LDL ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
1453810	63	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
699776	276	CTG ...	LWT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Liver, MEF, NSC, v6-5
692800	78	TTG ...	LWY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
375769	93	CTG ...	LAL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, v6-5
1409346	168	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
369010	102	ATG ...	MLT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF
1409217	51	TTG ...	LVD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, MEF
378013	177	CTG ...	LGG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, NSC, v6-5
374948	252	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
368331	249	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
1453842	45	TTG ...	LPC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
367834	225	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
691746	75	ATG ...	MGC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC
368021	240	TTG ...	LEA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
1145956	45	CTG ...	LHG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
377049	189	GTG ...	VAT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
369187	135	GTG ...	VTL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, v6-5
1622912	54	ATG ...	MKP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
697243	57	ATG ...	MSF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
1453817	87	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
369867	87	TTG ...	LVS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, v6-5
1408955	174	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
375100	273	GTG ...	VVF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver
1453789	93	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1186331	57	TTG ...	LSL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, MEF
369120	138	GTG ...	VNA ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, v6-5
368858	69	GTG ...	VPF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF
692867	39	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
371905	108	GTG ...	VNI ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, v6-5
696445	69	TTG ...	LLK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1622887	90	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
1408304	48	GTG ...	VDS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, MEF
692463	66	TTG ...	LKI ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF

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