Transcript 366019

Transcript

ID CARD

MetamORF ID

366019

ENSMUST00000145428

Name

Prlr-211

Strand

Biotype

processed_transcript

Start-end positions

10177414-10348286

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:19116

Aliases

AI987712,
ENSMUSG00000005268, MGI:97763, NCBI:19116,
OFF:Prlr, Pr-1, Pr-3,
Prlr, Prlr-rs1

Chr 15

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1406622	33	GTG ...	VGK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1407045	198	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
851886	96	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
850710	105	CTG ...	LEN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1407090	45	CTG ...	LDF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
1407116	156	CTG ...	LWV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
362427	186	GTG ...	VKQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
851818	72	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
851613	195	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
851728	159	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
850640	141	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1406541	45	CTG ...	LDY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1406920	57	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
31085	30	ATG ...	MAD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
851801	189	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
363602	69	GTG ...	VDP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
850817	96	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1406026	54	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1406324	36	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
33077	30	ATG ...	MAD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
360680	198	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1405834	30	CTG ...	LQA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver

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