Transcript 20404 | MetamORF

Transcript

ID CARD

MetamORF ID

20404

ENSMUST00000156678

Name

Prdx6-207

Strand

Biotype

processed_transcript

Start-end positions

161241564-161251169

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:11758

Aliases

1-Cys Prx,
1-cysPrx, 9430088D19Rik, AA690119,
aiPLA2, Aop2, Brp-12,
CP-3, ENSMUSG00000026701, GPx,
Ltw-4, Ltw4, Lvtw-4,
MGI:894320, NCBI:11758, NSGPx,
OFF:Prdx6, ORF06, Prdx5,
Prdx6

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55384	87	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1212474	237	ATC ...	ILY ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1714036	30	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
12479	129	ATG ...	MLT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
48009	249	CTG ...	LKL ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Spleen_B_cell, Testis, v6-5
51446	243	CTG ...	LSI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
54593	90	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
26297	117	GTG ...	VMV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
77288	123	GTG ...	VCT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
681602	153	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
11716	81	TTG ...	LGM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
7713	195	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
26013	129	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
8797	78	ATG ...	MIR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
13174	72	TTG ...	LDP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
11061	120	ATG ...	MVK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
48585	189	GTG ...	VVD ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
44932	171	CTG ...	LTG ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
14568	117	GTG ...	VKH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
90280	135	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
15143	81	TTG ...	LMI ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
847985	96	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
90771	57	TTG ...	LIA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
45085	87	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
15470	60	TTG ...	LPS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
1220842	219	ACG ...	TGR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14

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