Transcript 12772 | MetamORF

Transcript

ID CARD

MetamORF ID

12772

ENSMUST00000097293

Name

Ppp4r1-202

Strand

Biotype

processed_transcript

Start-end positions

65820145-65841856

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:70351

Aliases

3110001J10Rik,
ENSMUSG00000061950, MGI:1917601, NCBI:70351,
OFF:Ppp4r1, Pp4r1, Ppp4r1

Chr 17

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
708435	48	GTG ...	VMA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
37248	105	CTG ...	LQM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis, v6-5
36824	99	TTG ...	LLT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, R1E, Testis, v6-5
1864071	90	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1627818	51	GTG ...	VSY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1626088	39	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
37469	57	CTG ...	LLA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, Testis
1359597	60	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
36284	99	CTG ...	LPG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E, Testis
1151574	117	GTG ...	VHL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1195380	225	AGG ...	RVP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
38668	258	TTG ...	LMP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, R1E, Testis, v6-5
1862751	150	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
38661	177	CTG ...	LLE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, R1E, Testis, v6-5
1626873	51	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1151446	96	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
39102	243	CTG ...	LTL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, R1E, Testis, v6-5
38153	168	TTG ...	LSM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Testis, v6-5
1625329	30	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1151037	36	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
39386	207	GTG ...	VLL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, R1E, Testis, v6-5
1626263	51	CTG ...	LSL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1151334	30	ATG ...	MKI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
12771	51	GTG ...	VTD ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, Skin_tumor, Testis, v6-5
12917	54	TTG ...	LVT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, Skin_tumor, Testis, v6-5
1626497	36	CTG ...	LCC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1151238	111	TTG ...	LMP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
38807	189	CTG ...	LRQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis, v6-5
1150306	30	CTG ...	LIM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1625547	57	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1150856	54	TTG ...	LRE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
39048	264	GTG ...	VHL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Testis, v6-5
36126	126	GTG ...	VEQ ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Testis
36773	180	CTG ...	LDQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, R1E, Testis
1770407	54	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
707901	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1151400	90	TTG ...	LAN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1151563	84	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
37493	42	CTG ...	LRQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, Testis
39196	237	TTG ...	LAN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis, v6-5
39123	246	TTG ...	LLT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis, v6-5
39230	204	CTG ...	LLA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis, v6-5
1627694	30	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF

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