Transcript 53085 | MetamORF

Transcript

ID CARD

MetamORF ID

53085

ENSMUST00000124206

Name

Ppp3ca-203

Strand

Biotype

processed_transcript

Start-end positions

136670124-136797838

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:19055

Aliases

2900074D19Rik,
Caln, Calna, CN,
CnA, ENSMUSG00000028161, MGI:107164,
NCBI:19055, OFF:Ppp3ca, Ppp3ca

Chr 3

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
130912	36	TTG ...	LQP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
127094	165	TTG ...	LQR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, NSC, Spleen_B_cell
895341	51	ATT ...	IDP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
505167	252	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
505566	33	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
505993	135	GTG ...	VGK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
505673	36	TTG ...	LIP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
137989	81	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain
503742	186	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
136968	111	GTG ...	VQS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
503825	243	GTG ...	VRG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
131564	135	CTG ...	LAR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, NSC, Spleen_B_cell
53084	36	TTG ...	LIM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
504271	225	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
502588	111	CTG ...	LSV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
506341	213	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
54694	30	ATG ...	MMG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
139221	252	GTG ...	VKA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
505744	180	GTG ...	VEK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1014867	39	TTG ...	LST ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, NSC
505082	171	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
504809	249	TTG ...	LPV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
895490	57	AAG ...	KAI ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14

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