Transcript 29205 | MetamORF

Transcript

ID CARD

MetamORF ID

29205

ENSMUST00000089230

Name

Ppp2r2a-201

Strand

Biotype

protein_coding

Start-end positions

67014056-67072444

CDS Start-stop positions

67016374-67072096

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:71978

Aliases

2410004D02Rik,
ENSMUSG00000022052, MGI:1919228, mKIAA1541,
NCBI:71978, OFF:Ppp2r2a, Ppp2r2a

Chr 14

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1612208	30	GTG ...	VDW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
785220	96	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, BMDC, E14
1310277	96	ATT ...	ICE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1310284	75	AGG ...	RVT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1309275	60	ATT ...	ICE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1139533	45	TTG ...	LCT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
676053	36	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1307781	39	ATC ...	IWK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
465639	84	ATG ...	MKP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
352650	39	TTG ...	LNV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
680301	120	ATG ...	MKP ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1306674	51	ATT ...	ICS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
677569	30	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1309209	48	AGG ...	RWE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
945171	144	ATC ...	IRL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
466376	93	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
468651	246	CTG ...	LSE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, Spleen_B_cell
344085	78	CTG ...	LQN ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, v6-5
467906	120	CTG ...	LPT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
677780	30	TTG ...	LSS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E
350356	33	CTG ...	LAS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
352738	99	ATG ...	MNT ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, v6-5
344302	30	CTG ...	LPI ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
466191	135	GTG ...	VNA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Spleen_B_cell
947080	159	ATC ...	IRL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
347532	45	TTG ...	LWI ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
465820	30	ATG ...	MIF ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
420887	237	ACG ...	TPL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Overlapping sORF Upstream	C2C12, E14
1351332	42	ATG ...	MLP ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
352503	99	ATG ...	MIC ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
29897	30	CTG ...	LCK ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
1307490	54	ATC ...	IPA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
29204	33	GTG ...	VQV ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, NSC, R1E, Testis, v6-5
679568	111	CTG ...	LSP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, v6-5
1614918	57	CTG ...	LDP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1307825	141	ACG ...	TTA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1306789	45	ACG ...	TSP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1140300	42	CTG ...	LEE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
681337	120	GTG ...	VWG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, v6-5
1178918	105	AGG ...	RYM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1179163	66	ATT ...	ICS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
421177	252	ACG ...	TPL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
945932	57	GTG ...	VPS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, E14
1349952	69	TTG ...	LKN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
787536	171	TTG ...	LPT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, v6-5
1351759	39	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1179070	75	ATC ...	IWK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
352879	66	ATG ...	MKT ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, v6-5
466884	231	CTG ...	LSE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14, Spleen_B_cell
420861	123	ATC ...	ILP ...	Ribo-seq	ATC	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
786743	90	GTG ...	VIM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14
787173	126	GTG ...	VIM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, v6-5
353514	48	TTG ...	LTN ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, v6-5
1349355	60	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
467459	57	CTG ...	LPP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, R1E, Spleen_B_cell
467376	48	CTG ...	LPS ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
353236	33	CTG ...	LAS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
944556	42	ATC ...	IRA ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1613099	33	CTG ...	LVD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1309331	147	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
786321	105	GTG ...	VWG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell
946824	135	ATA ...	IWR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1309055	30	AGG ...	RST ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1310169	60	AGG ...	RVT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
676841	39	GTG ...	VGE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, R1E, v6-5
349751	63	ATG ...	MIC ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1178957	60	ACG ...	TTA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1306407	39	ACG ...	TQS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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