Transcript 35973 | MetamORF

Transcript

ID CARD

MetamORF ID

35973

ENSMUST00000173658

Name

Ppp2r1a-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

20945487-20958784

CDS Start-stop positions

20945506-20955914

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:51792

Aliases

6330556D22Rik,
ENSMUSG00000007564, MGI:1926334, NCBI:51792,
OFF:Ppp2r1a, PP2A, Ppp2r1a,
PR65

Chr 17

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
482141	123	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Spleen_B_cell
37514	150	CTG ...	LPQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, Liver, R1E, Spleen_B_cell, Testis
380996	66	CTG ...	LNS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell
35972	105	CTG ...	LAG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
478397	129	ATG ...	MDL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E, Spleen_B_cell
482771	57	GTG ...	VLI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, R1E, Spleen_B_cell
386914	60	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Liver, Spleen_B_cell
384081	39	GTG ...	VFA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E, Spleen_B_cell
1191144	63	ATT ...	IAV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
36131	180	GTG ...	VEA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
478969	93	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
37652	135	CTG ...	LEA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, Spleen_B_cell, Testis
1542207	204	ATG ...	MVE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
38521	33	TTG ...	LSH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E, Spleen_B_cell, Testis
38240	63	TTG ...	LVG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell, Testis
383689	93	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil, R1E, Spleen_B_cell
38038	123	GTG ...	VPL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
38405	213	GTG ...	VEE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, E14, Liver, R1E, Spleen_B_cell, Testis
385499	57	CTG ...	LRT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, R1E, Spleen_B_cell
37317	174	TTG ...	LRA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Liver, R1E, Spleen_B_cell, Testis
36971	81	TTG ...	LAL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, R1E, Testis
1193629	189	AAG ...	KAV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
38219	60	GTG ...	VGG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil, Testis
479615	72	TTG ...	LYS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Spleen_B_cell
38206	222	CTG ...	LAT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
37275	168	GTG ...	VNI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, Liver, R1E, Spleen_B_cell, Testis
37792	189	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, Liver, R1E, Spleen_B_cell, Testis
38355	111	TTG ...	LRQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Testis
388465	54	TTG ...	LAC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
37915	81	CTG ...	LGT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
37731	123	GTG ...	VMP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, Testis
384209	87	ATG ...	MRS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
38568	117	CTG ...	LVK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
36947	198	GTG ...	VRD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
38054	186	CTG ...	LAV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
1005025	102	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
481999	117	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
1541274	183	TTG ...	LGD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
481423	144	GTG ...	VLE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E, Spleen_B_cell
1193719	111	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
36879	195	GTG ...	VRL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
38238	93	TTG ...	LAE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
954281	90	AAG ...	KSW ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14
1005394	114	TTG ...	LPW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
38511	99	TTG ...	LAL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
1047070	174	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
955883	138	ATA ...	IVS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
384945	96	ATG ...	MMK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, R1E, Spleen_B_cell

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