Transcript 537661

Transcript

ID CARD

MetamORF ID

537661

ENSMUST00000125858

Name

Ppa2-204

Strand

Biotype

retained_intron

Start-end positions

133339109-133378082

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:74776

Aliases

1110013G13Rik,
ENSMUSG00000028013, MGI:1922026, NCBI:74776,
OFF:Ppa2, Ppa2, Sid6306

Chr 3

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
983184	36	GTG ...	VGI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
136382	126	ATG ...	MML ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
135990	102	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, Neutrophil, v6-5
140163	129	GTG ...	VVH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, Neutrophil, v6-5
1172899	30	TTG ...	LEN ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, v6-5
127556	33	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
1507086	33	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	NSC
1221071	51	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1218979	57	ATC ...	ILR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
139867	129	TTG ...	LMM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
1171841	33	CTG ...	LHM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver, MEF, v6-5
1220989	177	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
136168	54	ATG ...	MEN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
137694	30	TTG ...	LIR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
507102	30	TTG ...	LER ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
130058	72	TTG ...	LVE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
538017	33	CTG ...	LHY ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, v6-5
1424952	78	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
132897	48	TTG ...	LGL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
538135	69	ATG ...	MCT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1219871	30	AAG ...	KCD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1220465	51	GTG ...	VND ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
51958	120	GTG ...	VKI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, Neutrophil, v6-5
1505929	30	CTG ...	LQC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	NSC
130244	123	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3

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