Transcript 44276 | MetamORF

Transcript

ID CARD

MetamORF ID

44276

ENSMUST00000129163

Name

Pomt1-204

Strand

Biotype

retained_intron

Start-end positions

32236685-32255001

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:99011

Aliases

AI505244,
ENSMUSG00000039254, MGI:2138994, NCBI:99011,
OFF:Pomt1, Pomt1

Chr 2

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47396	177	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1877130	48	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
46409	87	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
46336	102	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
113487	57	CTG ...	LAF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1640333	63	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
49028	222	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
47277	45	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
96244	54	CTG ...	LIG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
44568	249	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1167974	114	TTG ...	LKR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
46371	237	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1162414	99	GTG ...	VVT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
44811	102	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1870839	60	GTG ...	VHW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
49339	123	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1640048	54	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
45389	90	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
45921	195	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1164975	72	TTG ...	LVA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
1639240	63	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
45660	63	GTG ...	VTC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, R1E
46093	96	GTG ...	VAF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
44560	213	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
46710	165	CTG ...	LQR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1636902	36	GTG ...	VEC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
48323	93	CTG ...	LLV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1871054	36	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
44714	189	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
45450	216	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1161755	96	GTG ...	VTV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
1639783	33	ATG ...	MET ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1210117	72	ACG ...	TSL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
44275	147	CTG ...	LPF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
44495	192	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1164197	78	TTG ...	LNL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
48460	108	GTG ...	VSN ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
1875270	39	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
47299	48	TTG ...	LPC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, R1E
44211	72	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
46200	87	GTG ...	VVN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
46624	135	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
44470	75	GTG ...	VVY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
48573	141	CTG ...	LVV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
735925	48	CTG ...	LQN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1874955	57	CTG ...	LDD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E

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