Transcript 64959 | MetamORF

Transcript

ID CARD

MetamORF ID

64959

ENSMUST00000004786

Name

Polr2e-201

Strand

Biotype

protein_coding

Start-end positions

80035949-80039795

CDS Start-stop positions

80036533-80039639

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:66420

Aliases

2410021N14Rik,
25kDa, AW208866, ENSMUSG00000004667,
MGI:1913670, NCBI:66420, OFF:Polr2e,
Polr2e, RPB5, XAP4

Chr 10

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
68514	75	GTG ...	VRA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
288462	78	GTG ...	VRA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Neutrophil, R1E, Spleen_B_cell, v6-5
923781	57	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
215867	42	GTG ...	VED ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, NSC, R1E
1254550	48	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
84950	111	CTG ...	LAA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, NSC, v6-5
929535	81	ACG ...	TTR ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
65317	90	GTG ...	VHS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, Neutrophil, NSC, v6-5
1230269	51	AGG ...	RPG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
90221	219	CTG ...	LGG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil, Testis
522225	54	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
524791	168	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Spleen_B_cell
82170	114	GTG ...	VLA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, NSC, v6-5
418653	75	AGG ...	RRR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
1261748	51	AGG ...	RTA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1283081	54	AGG ...	RPG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1283356	36	AGG ...	RSC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
90424	135	CTG ...	LAA ...	Ribo-seq	CTG		20	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
424650	144	GTG ...	VRP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
636540	99	TTG ...	LTV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
439914	222	TTG ...	LCA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
64958	195	CTG ...	LGG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Testis
1376979	243	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
73538	78	TTG ...	LGS ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, C2C12, E14, MEF, Neutrophil, NSC, v6-5
90148	138	GTG ...	VLA ...	Ribo-seq	GTG		18	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
90213	114	GTG ...	VHS ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1282163	72	AGG ...	RRP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
87820	102	TTG ...	LGS ...	Ribo-seq	TTG		20	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
444984	60	ATG ...	MCW ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5

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