Transcript 44794 | MetamORF

Transcript

ID CARD

MetamORF ID

44794

ENSMUST00000137686

Name

Pmpca-205

Strand

Biotype

processed_transcript

Start-end positions

26389354-26390202

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:66865

Aliases

1200002L24Rik,
4933435E07Rik, Alpha-MPP, ENSMUSG00000026926,
MGI:1918568, NCBI:66865, OFF:Pmpca,
P-55, Pmpca

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
738693	168	GTG ...	VVP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
49135	96	TTG ...	LMD ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
97866	189	CTG ...	LHT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
47958	51	ATG ...	MGF ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
45072	42	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
48498	60	GTG ...	VWA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
1011960	60	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
47926	93	ATG ...	MDR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
738946	198	TTG ...	LDL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
115593	78	TTG ...	LKP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
48007	126	CTG ...	LEY ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
95724	42	GTG ...	VWH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
727952	165	GTG ...	VPP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
808577	87	CTG ...	LDN ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
48947	105	TTG ...	LQQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
44793	159	TTG ...	LPG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
51738	78	GTG ...	VWA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell, Testis

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