Transcript 50679 | MetamORF

Transcript

ID CARD

MetamORF ID

50679

ENSMUST00000134871

Name

Pmpca-203

Strand

Biotype

processed_transcript

Start-end positions

26389356-26391966

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:66865

Aliases

1200002L24Rik,
4933435E07Rik, Alpha-MPP, ENSMUSG00000026926,
MGI:1918568, NCBI:66865, OFF:Pmpca,
P-55, Pmpca

Chr 2

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
115593	78	TTG ...	LKP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
48947	105	TTG ...	LQQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
96156	69	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
810812	111	GTG ...	VAY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
49135	96	TTG ...	LMD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
47926	93	ATG ...	MDR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	C2C12, MEF
50800	210	GTG ...	VAS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Neutrophil, R1E, Testis
108147	75	CTG ...	LCL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
50678	300	TTG ...	LPG ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
108416	66	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
101631	45	CTG ...	LWW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF
114022	78	ATG ...	MLC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
51208	228	CTG ...	LDN ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, R1E, Testis

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