Transcript 30875 | MetamORF

Transcript

ID CARD

MetamORF ID

30875

ENSMUST00000147645

Name

Pmm1-206

Strand

Biotype

retained_intron

Start-end positions

81955554-81960833

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:29858

Aliases

C77612,
ENSMUSG00000022474, MGI:1353418, NCBI:29858,
OFF:Pmm1, Pmm1

Chr 15

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32386	66	CTG ...	LQD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Testis
1180094	111	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1182302	129	AGG ...	RVQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1180192	114	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
31583	93	CTG ...	LNV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1181055	60	ATC ...	IGL ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	E14
32472	57	TTG ...	LIN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Testis
1182857	30	ACG ...	TGP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
358994	39	TTG ...	LTW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14
1181805	126	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1182125	171	ATT ...	IDP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1182027	102	ATC ...	ILC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
30874	81	CTG ...	LGE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, Testis

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