Transcript 36756 | MetamORF

Transcript

ID CARD

MetamORF ID

36756

ENSMUST00000019726

Name

Plin3-201

Strand

Biotype

protein_coding

Start-end positions

56278962-56290511

CDS Start-stop positions

56279732-56287859

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:66905

Aliases

1300012C15Rik,
ENSMUSG00000024197, M6prbp1, MGI:1914155,
NCBI:66905, OFF:Plin3, Plin3,
Tip47

Chr 17

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
380981	84	CTG ...	LLL ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, v6-5
701489	93	ATG ...	MWL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
39159	102	CTG ...	LPK ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
702314	102	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
711071	189	ATG ...	MHT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Neutrophil, R1E, v6-5
711507	165	CTG ...	LKR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil, v6-5
1359167	45	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
855163	96	ATG ...	MHT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver
38731	108	ATG ...	MRL ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
855808	102	GTG ...	VSM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver
1194048	75	AGG ...	RPP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
39073	87	CTG ...	LLW ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
710572	252	CTG ...	LSA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, Neutrophil, v6-5
1455649	114	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
36755	81	CTG ...	LLR ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1195200	141	AGC ...	SRW ...	Ribo-seq	AGC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1048873	252	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
1048630	273	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
705026	177	TTG ...	LPH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, v6-5
856033	165	TTG ...	LTV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver, R1E
1195605	96	AAG ...	KLK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
710944	132	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Neutrophil, v6-5
37309	51	ATG ...	MRL ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1190505	39	AAG ...	KLK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
379891	60	ATG ...	MVQ ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
1625466	39	GTG ...	VAQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
387047	66	ATG ...	MNT ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
384127	45	GTG ...	VLP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, v6-5
954822	75	AGG ...	RRQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
706006	273	GTG ...	VCG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
706365	39	ATG ...	MPG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1191042	126	AGG ...	RSR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
388789	78	CTG ...	LRP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, R1E, v6-5
1191442	81	AAG ...	KAS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
800452	135	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Liver, R1E
382091	90	CTG ...	LRG ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, v6-5
388461	84	CTG ...	LGL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Neutrophil, v6-5
955900	33	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
702656	42	GTG ...	VSN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil
799849	138	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Liver, R1E
701613	78	GTG ...	VWP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1195745	279	AAG ...	KAS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
702683	54	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1194009	45	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1627679	30	CTG ...	LEP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
411294	141	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, C2C12, E14, Liver, R1E
386009	30	CTG ...	LLW ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
387733	42	TTG ...	LPA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, v6-5
704434	39	CTG ...	LCR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF
711310	195	GTG ...	VSM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Neutrophil, R1E, v6-5
712452	291	ATG ...	MWL ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
712270	168	ATG ...	MLK ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
1193686	138	AGG ...	RWR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
705144	87	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
39044	117	ATG ...	MVQ ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Testis, v6-5
710310	285	CTG ...	LRK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, Neutrophil, v6-5
709598	228	ATG ...	MCV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Neutrophil, v6-5
706501	111	TTG ...	LSG ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, R1E, v6-5
391866	207	TTG ...	LRR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, v6-5
381570	48	GTG ...	VRR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E
1193482	30	AGG ...	RGG ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
37704	45	CTG ...	LPK ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
957614	90	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
709625	300	CTG ...	LCA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Neutrophil, v6-5
710941	246	GTG ...	VWT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, Neutrophil

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