Transcript 535135

Transcript

ID CARD

MetamORF ID

535135

ENSMUST00000142981

Name

Pld3-205

Strand

Biotype

retained_intron

Start-end positions

27533454-27537940

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

NCBI:18807

Aliases

ENSMUSG00000003363,
MGI:1333782, NCBI:18807, OFF:Pld3,
Pld3, Sam-9

Chr 7

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1473771	141	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
915584	60	ATA ...	IIK ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1473661	63	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
914116	78	ATC ...	IHR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
913514	132	AAG ...	KPI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1474686	168	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
72400	135	CTG ...	LRM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
912200	132	CTG ...	LLN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC
912517	54	AAG ...	KKH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1474549	123	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
911755	45	AGG ...	RRQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1442116	204	CTG ...	LRR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
912283	99	ATC ...	IYI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1026984	189	GTG ...	VSK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
223483	81	CTG ...	LIH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1474054	246	GTG ...	VST ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
915000	120	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC
913472	129	AAG ...	KLH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
75874	129	ATG ...	MNE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
222609	45	CTG ...	LHF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC
222881	36	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
598178	72	TTG ...	LTP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
590628	213	CTG ...	LFF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1026264	45	GTG ...	VHP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1472672	255	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
221162	135	TTG ...	LKP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell

Export data