Transcript 12723 | MetamORF

Transcript

ID CARD

MetamORF ID

12723

ENSMUST00000024706

Name

Pla2g7-201

Strand

Biotype

protein_coding

Start-end positions

43568269-43612201

CDS Start-stop positions

43588598-43611979

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:27226

Aliases

ENSMUSG00000023913,
MGI:1351327, NCBI:27226, OFF:Pla2g7,
PAF-AH, Pla2g7, R75400

Chr 17

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
954750	78	AGG ...	RRN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1496942	39	CTG ...	LPN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, R1E
12722	45	TTG ...	LIS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Skin_tumor
956402	162	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
38913	138	CTG ...	LSY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, Testis
36487	144	ATG ...	MLN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, NSC, Testis
956501	54	AAG ...	KTH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
39075	90	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1456015	81	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
38304	129	CTG ...	LSY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	NSC, Testis
954372	108	AGG ...	RRF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1863835	30	ATG ...	MFP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
954323	69	ATC ...	ILF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956927	30	AGG ...	RQY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
955818	117	ATC ...	IPG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
39206	153	ATG ...	MLN ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Testis
12863	123	ATG ...	MDV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
957687	126	ATC ...	IPG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
955864	78	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
390622	87	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC
37876	81	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1497931	57	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
1455887	93	CTG ...	LSN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1455497	42	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1455833	102	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
955873	39	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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