Transcript 606137

Transcript

ID CARD

MetamORF ID

606137

ENSMUST00000123671

Name

Piezo1-202

Strand

Biotype

retained_intron

Start-end positions

122481721-122484780

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:234839

Aliases

9630020g22,
ENSMUSG00000014444, Fam38a, MGI:3603204,
mKIAA0233, NCBI:234839, OFF:Piezo1,
Piezo1

Chr 8

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918888	129	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1824666	222	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1825484	108	GTG ...	VRE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1826118	129	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
918438	48	AGG ...	RQL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
919258	45	AGG ...	RPT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1824625	90	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
919390	39	ACG ...	TKA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
918616	78	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1823304	246	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1824251	240	CTG ...	LYV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
917253	96	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
919404	201	ATC ...	IAI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
919107	54	ATC ...	ISS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1822015	225	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
920235	255	AAG ...	KKK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
917439	171	ATC ...	IMF ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
918688	156	CTG ...	LPC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
1824951	147	GTG ...	VDR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
919837	57	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
917569	51	ATT ...	ITL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
919438	195	ATC ...	IIW ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
918696	99	AGG ...	RPH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
606136	51	CTG ...	LYR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
918816	180	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
920066	111	TTG ...	LVR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
919611	102	AGG ...	RGR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1825378	84	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E

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