Transcript 373407

Transcript

ID CARD

MetamORF ID

373407

ENSMUST00000155928

Name

Pi4ka-212

Strand

Biotype

protein_coding

Start-end positions

17280352-17308107

CDS Start-stop positions

17280569-

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:224020

Aliases

ENSMUSG00000041720,
MGI:2448506, NCBI:224020, OFF:Pi4ka,
Pi4ka, Pik4ca

Chr 16

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
376919	225	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
952296	60	ATC ...	IIC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	BMDC
953188	72	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
373668	96	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
376516	243	CTG ...	LFV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
378164	150	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
377638	255	GTG ...	VVH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Brain, E14
373406	78	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
953781	147	AAG ...	KPH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
373987	102	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
953455	270	AAG ...	KWF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC

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