Transcript 12237 | MetamORF

Transcript

ID CARD

MetamORF ID

12237

ENSMUST00000038945

Name

Phlda3-201

Strand

Biotype

protein_coding

Start-end positions

135766119-135769136

CDS Start-stop positions

135766449-135766826

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:27280

Aliases

ENSMUSG00000041801,
MGI:1351485, NCBI:27280, OFF:Phlda3,
Phlda3, Tih1

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14553	117	CTG ...	LAG ...	Ribo-seq	CTG	strong	13	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
14918	33	TTG ...	LGL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, MEF, NSC, Skin_tumor
418822	111	ATC ...	IAR ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	sORF Upstream	C2C12
1682041	108	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
674349	144	CTG ...	LRG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14
637348	69	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Downstream sORF	3T3, BMDC, E14
1185511	66	AGG ...	RPS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
683884	87	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
1267369	108	ACG ...	TLR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
933320	45	ATC ...	IAA ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
684842	156	GTG ...	VEH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
931494	159	AGG ...	RAC ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
663458	261	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
12236	54	CTG ...	LCG ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor
1298669	72	ATC ...	INR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1201790	69	AGG ...	RPR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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