Transcript 51234 | MetamORF

Transcript

ID CARD

MetamORF ID

51234

ENSMUST00000152617

Name

Phf20-210

Strand

Biotype

processed_transcript

Start-end positions

156196734-156309949

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:228829

Aliases

6820402O20Rik,
ENSMUSG00000038116, MGI:2444148, NCBI:228829,
OFF:Phf20, Phf20

Chr 2

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51233	204	GTG ...	VES ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
1879460	273	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1877372	249	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
125373	69	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1637582	75	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1212451	96	AGG ...	RNS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
96667	39	ATG ...	MPR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
94004	36	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1214168	33	GTG ...	VMR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
729261	33	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
1638202	42	ATG ...	MQG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1878933	270	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1878779	246	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1212622	72	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
1211289	120	CTG ...	LIC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1877971	216	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
120772	183	GTG ...	VTH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E
1207706	87	AGG ...	RLP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1872099	33	GTG ...	VQQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1875799	129	CTG ...	LDY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
739560	36	CTG ...	LRC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
123187	195	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
110833	42	CTG ...	LGK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
813212	33	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1212828	126	CTG ...	LIW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
96891	51	CTG ...	LTD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
496527	48	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
113506	54	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1871654	111	CTG ...	LEP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1877622	150	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
98382	93	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1212300	141	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, R1E

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