Transcript 55728 | MetamORF

Transcript

ID CARD

MetamORF ID

55728

ENSMUST00000128067

Name

Pex14-202

Strand

Biotype

retained_intron

Start-end positions

148963232-149099816

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:56273

Aliases

ENSMUSG00000028975,
MGI:1927868, NCBI:56273, OFF:Pex14,
Pex14, Pex14p, R75137

Chr 4

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56659	93	CTG ...	LGG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Testis, v6-5
153549	63	ATG ...	MVP ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver
158443	60	GTG ...	VPW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, v6-5
1016466	102	CTG ...	LRQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
59006	108	CTG ...	LLP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis, v6-5
147971	99	CTG ...	LTT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
150602	72	CTG ...	LES ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
55727	36	CTG ...	LSG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Neutrophil, Testis
148354	84	CTG ...	LTY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
153880	135	GTG ...	VQT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14
154139	33	GTG ...	VKM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
150163	33	TTG ...	LHL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, v6-5
57970	66	CTG ...	LER ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Testis, v6-5
158455	99	CTG ...	LFY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
57488	105	CTG ...	LPL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis, v6-5
1016648	123	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
153748	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5

Export data