Transcript 299631

Transcript

ID CARD

MetamORF ID

299631

ENSMUST00000137544

Name

Pes1-204

Strand

Biotype

processed_transcript

Start-end positions

3964049-3976884

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:64934

Aliases

ENSMUSG00000020430,
MGI:1890613, NCBI:64934, OFF:Pes1,
Pes1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9030	81	TTG ...	LVP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Spleen_B_cell
292684	33	ATG ...	MEC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
299630	87	GTG ...	VQT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E, Spleen_B_cell
641667	96	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
645305	69	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
450763	33	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
312427	36	CTG ...	LGQ ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
1078709	114	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
650909	72	TTG ...	LCR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil, R1E
446223	159	CTG ...	LRD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Neutrophil, R1E, Spleen_B_cell
18508	36	ATG ...	MER ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
770433	141	ATG ...	MMP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
9003	60	TTG ...	LFG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil, Spleen_B_cell
641904	159	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1080190	96	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
653522	84	ATG ...	MCR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
446899	138	CTG ...	LSM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, Spleen_B_cell
1838299	45	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
452461	33	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell

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