Transcript 7302 | MetamORF

Transcript

ID CARD

MetamORF ID

7302

ENSMUST00000144643

Name

Pdzd11-203

Strand

Biotype

retained_intron

Start-end positions

100622883-100625938

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:72621

Aliases

1810012H22Rik,
2310079D11Rik, 2700099C19Rik, AI854765,
ENSMUSG00000015668, MGI:1919871, NCBI:72621,
OFF:Pdzd11, Pdzd11, Pdzk11

Chr X

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1035322	66	TTG ...	LTQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
281207	63	GTG ...	VND ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
276288	36	ATG ...	MWI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
89121	72	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
282191	54	GTG ...	VDF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
88586	81	GTG ...	VVF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Testis
275620	93	GTG ...	VYH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain
89047	54	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1034585	81	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
275576	39	ATG ...	MMW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
88476	123	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
7301	42	ATG ...	MHI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
89534	36	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
442288	51	TTG ...	LAV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF

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