Transcript 14855 | MetamORF

Transcript

ID CARD

MetamORF ID

14855

ENSMUST00000130450

Name

Pdia3-202

Strand

Biotype

retained_intron

Start-end positions

121424630-121432136

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:14827

Aliases

58kDa,
ENSMUSG00000027248, Erp, ERp57,
ERp60, ERp61, Grp58,
MGI:95834, NCBI:14827, OFF:Pdia3,
PDI, PDI-Q2, Pdia3,
PI-PLC, PLC[a], Plca

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1209764	111	ATA ...	IFR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
965546	33	AAG ...	KIK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
967824	54	GTG ...	VIK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
44926	81	CTG ...	LRK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell
966790	42	ATA ...	ITT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1206046	54	ATC ...	ILL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
968584	30	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
108084	66	GTG ...	VAY ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF
964841	75	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
497623	30	TTG ...	LHT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver
968112	111	AAG ...	KQD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1209697	117	ATC ...	ITI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
812031	63	TTG ...	LTF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
1209813	36	AAG ...	KTK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
967200	45	ATG ...	MPQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1210231	45	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
862851	69	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
14854	30	GTG ...	VKE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Skin_tumor
15842	51	ATG ...	MQV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Spleen_B_cell
15611	75	TTG ...	LRD ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell
968331	33	ATT ...	IYS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
46529	51	TTG ...	LLT ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Spleen_B_cell
965690	84	AAG ...	KFE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
15883	33	CTG ...	LVK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Skin_tumor, Spleen_B_cell
48897	39	TTG ...	LKT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF
15736	99	TTG ...	LKK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF

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