Transcript 16296 | MetamORF

Transcript

ID CARD

MetamORF ID

16296

ENSMUST00000028683

Name

Pdia3-201

Strand

Biotype

protein_coding

Start-end positions

121413775-121438687

CDS Start-stop positions

121414039-121437699

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:14827

Aliases

58kDa,
ENSMUSG00000027248, Erp, ERp57,
ERp60, ERp61, Grp58,
MGI:95834, NCBI:14827, OFF:Pdia3,
PDI, PDI-Q2, Pdia3,
PI-PLC, PLC[a], Plca

Chr 2

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
413006	90	ACG ...	TPL ...	Ribo-seq	ACG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, C2C12, E14
971505	120	AGG ...	RFL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
106234	39	TTG ...	LNS ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
51549	60	ATG ...	MMW ...	Ribo-seq	ATG		19	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
48454	54	GTG ...	VDI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
44900	75	TTG ...	LNF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
16604	99	TTG ...	LNF ...	Ribo-seq	TTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
44926	81	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Testis
966032	87	AAG ...	KAR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
110864	33	TTG ...	LML ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, Spleen_B_cell
51676	57	GTG ...	VAR ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1209806	45	AAG ...	KHY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
965149	33	ATC ...	IYN ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
113470	54	GTG ...	VAT ...	Ribo-seq	GTG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
46529	51	TTG ...	LLT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
965935	45	AGG ...	RLL ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
51725	48	ATG ...	MKR ...	Ribo-seq	ATG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
119280	78	TTG ...	LSC ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
15042	105	ATG ...	MGS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E, Spleen_B_cell
48970	48	ATG ...	MKR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
16384	96	CTG ...	LLK ...	Ribo-seq	CTG		22	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
969343	45	ACG ...	TRS ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
47074	30	CTG ...	LSM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
970557	45	AGG ...	RVF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
971548	81	AGG ...	RTY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
115414	51	ATG ...	MAR ...	Ribo-seq	ATG	strong	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
48897	39	TTG ...	LKT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
971051	87	AAG ...	KAR ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
50866	111	TTG ...	LWL ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
970596	66	AGG ...	RSS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
744989	42	CTG ...	LEK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
50556	186	CTG ...	LPS ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
50306	39	ATG ...	MLK ...	Ribo-seq	ATG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1211090	30	ATT ...	ILR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
15341	132	CTG ...	LPT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E, Testis
45220	30	ATG ...	MLD ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis
50772	48	CTG ...	LNP ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
971167	51	AAG ...	KSR ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
119785	84	ATG ...	MPQ ...	Ribo-seq	ATG		18	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
49080	60	ATG ...	MMW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, R1E, Testis
1012855	33	CTG ...	LVW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
15357	66	ATG ...	MVK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
48824	57	ATG ...	MWT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, R1E, Testis
122734	54	ATG ...	MKS ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
48368	36	TTG ...	LPL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
15428	96	GTG ...	VAT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
16295	78	GTG ...	VAT ...	Ribo-seq	GTG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
126099	72	ATG ...	MMC ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
413010	90	AAG ...	KER ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
1215402	33	AGG ...	RIA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
47792	39	ATG ...	MLK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, R1E, Testis
968395	39	AGG ...	RTS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
47715	246	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
51629	57	ATG ...	MWT ...	Ribo-seq	ATG		18	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1215153	54	AGG ...	RRE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
15086	30	GTG ...	VWT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
49579	114	CTG ...	LLW ...	Ribo-seq	CTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
121658	69	ATG ...	MCL ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
16371	126	CTG ...	LER ...	Ribo-seq	CTG		23	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
734721	48	ATG ...	MIL ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
412306	66	ACG ...	TPL ...	Ribo-seq	ACG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, C2C12, E14
971916	30	ATA ...	IAF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
15495	63	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, R1E
969502	72	AAG ...	KKN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
15959	51	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1214284	60	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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