Transcript 61905 | MetamORF

Transcript

ID CARD

MetamORF ID

61905

ENSMUST00000202186

Name

Pdgfra-207

Strand

Biotype

non_stop_decay

Start-end positions

75152352-75175150

CDS Start-stop positions

75162243-

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:18595

Aliases

AI115593,
CD140a, ENSMUSG00000029231, MGI:97530,
NCBI:18595, OFF:Pdgfra, Pdgfr-2,
Pdgfra

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
63357	45	CTG ...	LQW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NSD sORF	Testis
63838	120	GTG ...	VVE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
1020135	135	TTG ...	LAN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NSD sORF	Brain
62945	132	CTG ...	LEM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NSD sORF	3T3, Brain, Testis
64537	117	GTG ...	VEV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
1018877	108	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NSD sORF	Brain
2249	54	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NSD sORF	MEF
1019780	240	TTG ...	LHN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NSD sORF	Brain
64135	108	GTG ...	VYK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
1019080	219	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NSD sORF	Brain
61904	84	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NSD sORF	3T3, Brain, Testis
64929	156	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
1020034	42	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NSD sORF	Brain
179352	36	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NSD sORF	MEF
63705	141	TTG ...	LHE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
65935	81	GTG ...	VTC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NSD sORF	3T3, Brain, Testis
62796	138	CTG ...	LNL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NSD sORF	3T3, Brain, Testis
1019669	222	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NSD sORF	Brain
62437	111	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
64215	66	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
66223	105	CTG ...	LIR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
63275	60	CTG ...	LIE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis
63960	78	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NSD sORF	Brain, Testis

Export data