Transcript 24602 | MetamORF

Transcript

ID CARD

MetamORF ID

24602

ENSMUST00000044352

Name

Pcnx4-201

Strand

Biotype

protein_coding

Start-end positions

72536383-72580119

CDS Start-stop positions

72541420-72579555

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:67708

Aliases

1810048J11Rik,
4932413O10, AU017192, ENSMUSG00000034501,
MGI:1914958, NCBI:67708, OFF:Pcnx4,
Pcnx4, Pcnxl4

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1299516	75	ATG ...	MWS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1299176	150	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1606804	39	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1299811	141	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1300185	66	ATG ...	MWS ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC
24751	42	GTG ...	VVP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Testis
326432	222	ATG ...	MGL ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC
24940	102	CTG ...	LAG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, Testis
24601	153	TTG ...	LIL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	3T3, Brain, R1E, Testis
329600	243	TTG ...	LHR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
25237	123	CTG ...	LEA ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, R1E, Testis
420034	135	ACG ...	TGA ...	Ribo-seq	ACG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
25764	141	ATG ...	MGT ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Testis
25537	105	CTG ...	LLA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, Testis

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