Transcript 44193 | MetamORF

Transcript

ID CARD

MetamORF ID

44193

ENSMUST00000041643

Name

Pcif1-201

Strand

Biotype

protein_coding

Start-end positions

164879365-164894454

CDS Start-stop positions

164884096-164891117

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:228866

Aliases

2310022K11Rik,
C20orf67, CAPAM, ENSMUSG00000039849,
F730014I05Rik, MGI:2443858, NCBI:228866,
OFF:Pcif1, Pcif1

Chr 2

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44192	63	GTG ...	VWV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E, Testis
969440	273	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
49387	42	ATG ...	MRI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Testis
47804	54	CTG ...	LRW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Testis
1208752	117	ATG ...	MQA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
738140	102	GTG ...	VHP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
102801	39	GTG ...	VWP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, Brain
1215521	132	ATG ...	MQA ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
47293	57	GTG ...	VLR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, R1E, Testis
50304	129	CTG ...	LGR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
814610	144	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
50270	42	GTG ...	VWP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, R1E, Spleen_B_cell, Testis
971442	123	AGG ...	RAR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
50064	144	ATG ...	MAA ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1208557	72	AAG ...	KDV ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
970145	138	AGG ...	RQL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
500910	69	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
965048	252	AGG ...	RAR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1208986	246	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14

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