Transcript 644826

Transcript

ID CARD

MetamORF ID

644826

ENSMUST00000176791

Name

Pbx1-207

Strand

Biotype

retained_intron

Start-end positions

168424442-168432169

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:18514

Aliases

2310056B04Rik,
D230003C07Rik, ENSMUSG00000052534, MGI:97495,
NCBI:18514, OFF:Pbx1, Pbx-1,
Pbx1

Chr 1

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
364372	60	TTG ...	LQR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1204088	174	GTG ...	VVY ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
723107	234	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
975949	168	CTG ...	LKN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
407303	36	ATG ...	MHI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1233015	147	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1186423	195	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
662187	57	TTG ...	LPA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1576037	210	AGG ...	RRK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1196678	180	AGG ...	RLM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
699810	231	CTG ...	LEF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
327322	42	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
362705	87	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
102984	63	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
321764	33	TTG ...	LGF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
639009	243	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1202984	45	ACG ...	TAG ...	Ribo-seq	ACG	optimal	1	sORFs_org_Mouse	Intronic sORF	E14
644825	186	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
303493	30	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
418541	81	ACG ...	TEE ...	Ribo-seq	ACG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF

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