Transcript 29618 | MetamORF

Transcript

ID CARD

MetamORF ID

29618

ENSMUST00000022612

Name

Pbk-201

Strand

Biotype

protein_coding

Start-end positions

65805837-65817822

CDS Start-stop positions

65809235-65817413

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:52033

Aliases

2810434B10Rik,
AW538537, D14Ertd732e, ENSMUSG00000022033,
MGI:1289156, NCBI:52033, OFF:Pbk,
Pbk, TOPK

Chr 14

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1764792	33	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1613862	171	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1614566	123	CTG ...	LIL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1536905	48	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
676440	30	CTG ...	LHT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1613753	57	TTG ...	LAG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
1306660	93	AAG ...	KEL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1614526	105	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1615018	162	ATG ...	MMK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
676029	69	GTG ...	VCA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
29617	102	ATG ...	MTP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Testis
1613550	117	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1536031	33	TTG ...	LAL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
29967	81	TTG ...	LNS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC, Testis
1536999	147	ATG ...	MQL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1536340	60	ATG ...	MAS ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1350128	45	ATG ...	MET ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1699897	36	ATG ...	MII ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
675399	36	TTG ...	LGR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
1613407	60	GTG ...	VLA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
1140450	33	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1350492	30	ATG ...	MYS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1613265	159	ATG ...	MKH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1536869	36	ATG ...	MCL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1042294	45	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
676804	57	ATG ...	MRI ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5

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