Transcript 657825

Transcript

ID CARD

MetamORF ID

657825

ENSMUST00000134089

Name

Patz1-207

Strand

Biotype

protein_coding

Start-end positions

3289281-3309083

CDS Start-stop positions

3294518-3307681

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:56218

Aliases

8430401L15Rik,
AI447519, ENSMUSG00000020453, Mazr,
MGI:1891832, NCBI:56218, OFF:Patz1,
Patz, Patz1, Zfp278

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293538	48	GTG ...	VDP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
1125453	90	TTG ...	LVH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
1122705	30	TTG ...	LFS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
296930	207	TTG ...	LNK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
311697	150	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
309876	66	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
302759	159	TTG ...	LGD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
658970	45	CTG ...	LMP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
1126731	51	TTG ...	LSP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
657824	42	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
1130282	54	GTG ...	VRK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1128537	42	TTG ...	LDF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
298727	297	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
1122427	186	GTG ...	VHV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	R1E, v6-5
300177	36	GTG ...	VDQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
658611	60	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
658967	48	GTG ...	VLM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
311178	57	GTG ...	VWK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5

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