Transcript 55591 | MetamORF

Transcript

ID CARD

MetamORF ID

55591

ENSMUST00000134751

Name

Park7-208

Strand

Biotype

protein_coding

Start-end positions

150905126-150909868

CDS Start-stop positions

-150908407

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:57320

Aliases

DJ-1,
Dj1, ENSMUSG00000028964, MGI:2135637,
NCBI:57320, OFF:Park7, Park7

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59980	186	TTG ...	LNT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, R1E, Testis
1229356	54	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
515045	84	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, B_cell
58259	54	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	E14, Testis
55590	78	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Testis
60093	237	ATG ...	MRA ...	Ribo-seq	ATG		10	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Liver, MEF, R1E, Testis, v6-5
1225461	87	AGG ...	RFL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1225573	99	ACG ...	TSG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
154502	54	ATG ...	MWW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	R1E
59514	30	CTG ...	LWM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	R1E, Testis
514845	66	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Liver
1575721	222	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	MEF
1059	51	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	R1E
60095	204	CTG ...	LRT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Liver, MEF, R1E, Testis, v6-5
515712	81	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Liver
60595	162	CTG ...	LQS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
1888262	78	ATG ...	MQK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	R1E
55672	81	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, Testis
513556	96	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, E14, v6-5
161857	177	GTG ...	VEE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, v6-5
56983	93	CTG ...	LGT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, Testis, v6-5
414304	42	GTG ...	VAS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	3T3, B_cell, C2C12, E14, Neutrophil
56810	114	ATG ...	MRA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	E14, Testis, v6-5
60770	87	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, R1E, Testis

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