Transcript 11436 | MetamORF

Transcript

ID CARD

MetamORF ID

11436

ENSMUST00000056177

Name

Pacsin2-201

Strand

Biotype

protein_coding

Start-end positions

83376122-83464570

CDS Start-stop positions

83377618-83401926

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:23970

Aliases

AI197433,
ENSMUSG00000016664, MGI:1345153, NCBI:23970,
OFF:Pacsin2, Pacsin2, SdpII

Chr 15

ORFs

60 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
472443	48	TTG ...	LRR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
684298	87	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
689502	135	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
950012	75	ATC ...	ICP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
32811	93	CTG ...	LQK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
948552	195	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1044112	30	ATG ...	MNR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, v6-5
470867	75	ATG ...	MSG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
950183	51	AAG ...	KCP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
950367	195	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
366077	63	CTG ...	LWE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
11566	57	GTG ...	VVC ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
361774	48	ATG ...	MTL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
690298	198	TTG ...	LIR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
472977	99	GTG ...	VSL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Liver, MEF, R1E, Spleen_B_cell
473088	111	CTG ...	LPP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
362390	174	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
686097	30	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
471512	48	ATG ...	MHS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
361146	105	ATG ...	MPT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
691327	300	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
949260	45	AGG ...	RMA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
683565	39	GTG ...	VLS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
363244	150	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
421586	51	ACG ...	TMT ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
359323	42	CTG ...	LWE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
948995	33	AAG ...	KMN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
683472	69	GTG ...	VQR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1181387	123	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
421666	114	CTG ...	LLP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, C2C12, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
472719	192	GTG ...	VKT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
360522	186	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
949419	30	AAG ...	KCP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
949974	240	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
421656	72	ACG ...	TMT ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, C2C12
949237	54	AAG ...	KTL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
949345	30	AGG ...	RHG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
356749	78	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
471231	42	ATG ...	MAF ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
365165	69	ATG ...	MTL ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
33201	81	CTG ...	LSP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
359212	141	CTG ...	LMM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
359271	135	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
690872	213	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
421654	135	CTG ...	LTP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, C2C12, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
471868	33	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
32192	72	CTG ...	LQK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
471805	39	GTG ...	VGP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
689096	66	ATG ...	MWL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
11449	36	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
950142	207	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
473693	156	CTG ...	LSA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
472651	123	CTG ...	LEC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
358966	138	ATG ...	MMS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
357347	60	CTG ...	LSP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
357556	81	TTG ...	LMR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
683605	36	ATG ...	MKM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil, v6-5
11435	57	ATG ...	MKT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC, Skin_tumor, Spleen_B_cell, v6-5
421414	180	ACG ...	TGR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
948063	63	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

Export data