Transcript 55586 | MetamORF

Transcript

ID CARD

MetamORF ID

55586

ENSMUST00000159758

Name

Osbpl9-212

Strand

Biotype

retained_intron

Start-end positions

109171802-109202234

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:100273

Aliases

2600011I06Rik,
AU015843, ENSMUSG00000028559, MGI:1923784,
NCBI:100273, OFF:Osbpl9, Orp-9,
Osbpl9

Chr 4

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
57974	48	CTG ...	LDY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Testis
547250	30	ATG ...	MQG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
57522	99	CTG ...	LSK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Testis, v6-5
55585	30	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Testis
57454	81	GTG ...	VMK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Testis, v6-5
57678	51	GTG ...	VLD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, Testis
1228830	114	ATC ...	IVE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1653758	60	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
58536	111	GTG ...	VEG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Testis, v6-5

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