Transcript 72413 | MetamORF

Transcript

ID CARD

MetamORF ID

72413

ENSMUST00000080975

Name

Os9-201

Strand

Biotype

protein_coding

Start-end positions

127095650-127121125

CDS Start-stop positions

127096247-127121118

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:216440

Aliases

4632413K17Rik,
AU022351, ENSMUSG00000040462, MGI:1924301,
NCBI:216440, OFF:Os9, Os9

Chr 10

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
928904	39	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
268989	210	ATG ...	MVS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
289437	69	TTG ...	LAT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, NSC, Spleen_B_cell
162776	48	ATG ...	MRI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, Neutrophil, Spleen_B_cell
288985	90	GTG ...	VIS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
289271	285	CTG ...	LPH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil
287059	132	TTG ...	LCK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
636117	39	GTG ...	VPP ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF, NSC, v6-5
287615	213	CTG ...	LSQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil
289374	204	ATG ...	MVT ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
289574	246	CTG ...	LMS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
287921	243	ATG ...	MST ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell
286146	177	ATG ...	MVT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
221185	45	GTG ...	VTR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Spleen_B_cell
290419	189	CTG ...	LIV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, Neutrophil
189666	78	CTG ...	LEL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, NSC, Spleen_B_cell
6713	42	CTG ...	LAW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Spleen_B_cell
213546	51	CTG ...	LMR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
288545	222	TTG ...	LPP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Spleen_B_cell
289580	186	ATG ...	MAS ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell
929494	153	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
284990	57	GTG ...	VKE ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, NSC, Spleen_B_cell
514224	66	GTG ...	VTS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Neutrophil, Spleen_B_cell
918885	42	ATA ...	IQE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
216639	60	TTG ...	LRS ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
219972	99	ATG ...	MSA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
287686	237	ATG ...	MVS ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
263767	36	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
1749312	63	GTG ...	VVK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
901157	33	ACG ...	TSY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
638690	126	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
166687	207	GTG ...	VSP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Spleen_B_cell
275162	30	ATG ...	MNP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
7782	81	CTG ...	LRL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
163465	54	CTG ...	LRL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Spleen_B_cell
929321	276	AGG ...	RPF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
289469	105	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
289916	213	TTG ...	LGL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell
182647	114	CTG ...	LLL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, Spleen_B_cell, v6-5
89105	252	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	CDS sORF	BMDC, Liver, Spleen_B_cell, Testis
1736973	60	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
289202	108	ATG ...	MSA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
229735	96	ATG ...	MSA ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
916653	144	AGG ...	REP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
182930	36	GTG ...	VRA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
289864	201	GTG ...	VTT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Spleen_B_cell
72412	78	CTG ...	LPA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, Spleen_B_cell, Testis, v6-5
928728	123	ATC ...	IHS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
218819	123	TTG ...	LCL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
281938	57	GTG ...	VRC ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
287966	234	GTG ...	VSP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
217834	45	ATG ...	MAS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
928708	39	ATG ...	MNL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
289259	132	ATG ...	MDV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
159970	273	CTG ...	LET ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
160331	42	GTG ...	VIS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
288740	300	CTG ...	LET ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
248505	174	GTG ...	VTT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
190726	105	GTG ...	VSW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
215248	33	CTG ...	LKV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil
7690	69	CTG ...	LAW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
284786	51	TTG ...	LAT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
289831	198	GTG ...	VRC ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
445393	84	GTG ...	VTS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, NSC, Spleen_B_cell
929105	186	ATA ...	IQE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
288483	192	ATG ...	MRI ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
289931	195	CTG ...	LMR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, Liver, Neutrophil, Spleen_B_cell
90473	246	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	CDS sORF	BMDC, Liver, Spleen_B_cell, Testis
168841	48	TTG ...	LCD ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
224852	42	CTG ...	LLW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell
290180	144	ATG ...	MNS ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell

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