Transcript 66638 | MetamORF

Transcript

ID CARD

MetamORF ID

66638

ENSMUST00000142987

Name

Orc5-205

Strand

Biotype

processed_transcript

Start-end positions

22523551-22550375

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:26429

Aliases

AL033327,
ENSMUSG00000029012, MGI:1347044, MmORC5,
NCBI:26429, OFF:Orc5, Orc5,
Orc5l

Chr 5

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66860	204	GTG ...	VVP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, NSC, R1E, Testis
834625	42	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
573836	147	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, R1E
566934	60	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
172327	87	CTG ...	LDK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, v6-5
1088589	129	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
519687	42	TTG ...	LNV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
66637	201	GTG ...	VPA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, NSC, R1E, Testis
186998	180	TTG ...	LES ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, NSC, R1E, Spleen_B_cell
183744	45	GTG ...	VLN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
61929	219	CTG ...	LPH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
170446	36	TTG ...	LGK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1312102	36	GTG ...	VNR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
176404	45	TTG ...	LPG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1089655	36	CTG ...	LNI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1310678	93	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
65144	168	TTG ...	LEQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1087598	39	GTG ...	VLN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
62616	147	CTG ...	LSH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
176916	30	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
171166	39	GTG ...	VST ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
168683	72	TTG ...	LES ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
568371	30	CTG ...	LGS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, v6-5
179952	72	CTG ...	LWR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, v6-5
565678	48	CTG ...	LKK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
185652	138	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver
66308	204	GTG ...	VNC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1089471	57	ATG ...	MFY ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5

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