Transcript 850894

Transcript

ID CARD

MetamORF ID

850894

ENSMUST00000164189

Name

Oplah-204

Strand

Biotype

protein_coding

Start-end positions

76300954-76307389

CDS Start-stop positions

-76306645

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:75475

Aliases

1700010G02Rik,
5-OPase, ENSMUSG00000022562, MGI:1922725,
NCBI:75475, OFF:Oplah, Oplah

Chr 15

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
851846	72	TTG ...	LPS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
850936	60	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Liver
851304	45	ATG ...	MLC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Liver
850893	57	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Liver
851661	42	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Liver
851868	36	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Liver
851248	48	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
851541	39	ATG ...	MQT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver

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