Transcript 3686 | MetamORF

Transcript

ID CARD

MetamORF ID

3686

ENSMUST00000084500

Name

Oat-201

Strand

Biotype

protein_coding

Start-end positions

132557478-132576398

CDS Start-stop positions

132558170-132570104

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:18242

Aliases

AI194874,
ENSMUSG00000030934, MGI:97394, NCBI:18242,
Oat, OFF:Oat, rhg

Chr 7

ORFs

84 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
231963	150	TTG ...	LLM ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
75433	147	CTG ...	LLC ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
235044	129	TTG ...	LKP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF
590810	66	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
78058	126	ATG ...	MPL ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
234481	180	CTG ...	LPV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell, v6-5
232990	198	GTG ...	VRM ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell
230328	102	CTG ...	LWI ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
231021	147	CTG ...	LMK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
877491	93	TTG ...	LDP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
914535	117	AAG ...	KSA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
215970	39	GTG ...	VLS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF
74807	96	GTG ...	VML ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, Testis
879758	231	CTG ...	LKQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1250701	87	AGG ...	RSP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
233466	144	ATG ...	MKY ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
223930	48	GTG ...	VLM ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF
229497	75	CTG ...	LPP ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
77209	222	CTG ...	LMG ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis, v6-5
878096	102	ATG ...	MMA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
753134	213	TTG ...	LFH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF
232752	192	ATG ...	MTV ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell, v6-5
77797	219	ATG ...	MGT ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
227195	48	CTG ...	LER ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil
593203	36	TTG ...	LGR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, v6-5
235205	159	ATG ...	MMA ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
74084	135	CTG ...	LQS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Spleen_B_cell, Testis
72952	33	CTG ...	LRM ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, Spleen_B_cell, Testis
234064	78	CTG ...	LIW ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell, v6-5
3685	39	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
4474	69	TTG ...	LLP ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Skin_tumor, Testis
600441	48	GTG ...	VSL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
591366	30	GTG ...	VHT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF
73507	162	ATG ...	MGT ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis
228942	54	TTG ...	LGS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
73104	141	GTG ...	VGC ...	Ribo-seq	GTG	moderate	17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
78276	120	TTG ...	LSS ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell, Testis
232128	93	ATG ...	MRM ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
589296	90	GTG ...	VLF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver
228341	51	TTG ...	LNG ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, R1E, Spleen_B_cell, v6-5
233754	87	ATG ...	MSD ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
213873	102	CTG ...	LLP ...	Ribo-seq	CTG	weak	14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
75766	123	TTG ...	LLM ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
228636	60	ATG ...	MSD ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
233742	150	TTG ...	LDP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, NSC
76529	72	ATG ...	MLL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, Testis
879035	57	TTG ...	LGL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
4135	66	CTG ...	LPS ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, Skin_tumor, Spleen_B_cell, Testis
879087	240	GTG ...	VGR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
974339	102	AAG ...	KTV ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
231636	117	CTG ...	LVD ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
600400	66	GTG ...	VAE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF
76461	117	ATG ...	MKY ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
598648	90	CTG ...	LKY ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Liver, MEF
72229	45	CTG ...	LSA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, Spleen_B_cell
232280	156	ATG ...	MAL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
72908	90	CTG ...	LVD ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
74249	150	TTG ...	LLL ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
878277	57	GTG ...	VNT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
592908	60	TTG ...	LVN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
230043	54	CTG ...	LSG ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
77075	192	CTG ...	LQS ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
77655	225	TTG ...	LLM ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis, v6-5
916605	75	ATA ...	IWF ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
589808	33	GTG ...	VIS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
913601	48	ATA ...	IWF ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
216013	36	CTG ...	LSA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF
77307	231	TTG ...	LFL ...	Ribo-seq	TTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis, v6-5
214749	51	CTG ...	LIW ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
214703	42	ATG ...	MVL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
217268	39	CTG ...	LHV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF
73351	120	CTG ...	LMK ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
592920	33	ATG ...	MWK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
533919	36	TTG ...	LLR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
74641	111	CTG ...	LPR ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
222624	75	CTG ...	LWI ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
601173	63	TTG ...	LGR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, NSC, v6-5
594746	33	ATG ...	MVH ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
877508	99	ATG ...	MAL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
879114	258	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
229671	30	TTG ...	LEG ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, v6-5
72471	93	ATG ...	MLG ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell, Testis
211653	66	ATG ...	MRM ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
216272	99	TTG ...	LPQ ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5

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