Transcript 41306 | MetamORF

Transcript

ID CARD

MetamORF ID

41306

ENSMUST00000184970

Name

Nxf1-211

Strand

Biotype

protein_coding

Start-end positions

8757107-8772456

CDS Start-stop positions

8757232-8765275

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:53319

Aliases

ENSMUSG00000010097,
Mex67, MGI:1858330, Mvb1,
NCBI:53319, Nxf1, OFF:Nxf1,
Tap

Chr 19

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
490977	159	ATG ...	MVG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
408095	171	CTG ...	LCC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, R1E
1203633	51	AGG ...	RAS ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
41305	132	ATG ...	MAS ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, Liver, R1E, Testis
1204155	30	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1545259	54	TTG ...	LQA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E
1201115	69	ATC ...	IVG ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1204130	129	ATG ...	MPA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, R1E
1868226	33	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1204381	171	ATC ...	IVG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
718521	36	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1202734	39	ATT ...	IFL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1201703	135	ATC ...	IVG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1205651	51	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream sORF	E14, R1E
1869846	60	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1545289	120	CTG ...	LKK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E
402712	204	CTG ...	LCR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, R1E
42290	60	GTG ...	VRV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, Testis
1545266	30	CTG ...	LYG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
723386	36	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1204889	30	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream sORF	E14
1203893	180	ATT ...	IVN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream sORF	E14
491454	87	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
43010	72	CTG ...	LYA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream sORF	Liver, R1E
1870451	36	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1204499	84	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1203029	48	ATC ...	IYH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1364501	33	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1204775	96	ATG ...	MAM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Downstream sORF	Brain, E14, R1E
487975	57	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1201610	90	CTG ...	LHP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14
1204989	57	TTG ...	LLA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream sORF	E14, R1E
1544956	33	TTG ...	LWR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1364828	93	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
491852	150	ATG ...	MIE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
726864	105	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
405129	48	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
722356	57	ATG ...	MKI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1205489	78	AAG ...	KTI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream sORF	E14
726701	72	ATG ...	MGP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
1870229	30	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1203024	138	TTG ...	LCG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, R1E
1204427	72	ATA ...	ITG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream sORF	E14
1870360	63	ATG ...	MSK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream sORF	R1E
719356	54	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1679222	54	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
43056	72	TTG ...	LDC ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, Testis
1364530	39	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1870356	66	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream sORF	R1E
1680095	60	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream sORF	MEF, R1E
14343	63	TTG ...	LTE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1205418	72	ATC ...	IEK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41852	81	TTG ...	LPS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, R1E, Testis
1205665	84	ATG ...	MGS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, R1E
1204384	69	ATT ...	ILY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream sORF	E14
42092	117	ATG ...	MCC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver, R1E, Testis
408049	297	CTG ...	LAC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1160862	123	GTG ...	VFF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E
404638	189	ATG ...	MSA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, Liver
1200995	117	AAG ...	KKS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
403182	153	ATG ...	MCP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, Liver, R1E
1202823	141	ATT ...	ICK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
491471	126	CTG ...	LYG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1870392	39	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1869686	159	GTG ...	VRN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E
1200725	150	ATG ...	MMN ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, R1E
1203399	42	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1200515	39	ATG ...	MIC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1870531	141	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream sORF	R1E
1545626	147	ATG ...	MNY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E
1869220	39	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	R1E

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