Transcript 18608 | MetamORF

Transcript

ID CARD

MetamORF ID

18608

ENSMUST00000138998

Name

Nup85-206

Strand

Biotype

processed_transcript

Start-end positions

115581641-115583906

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:445007

Aliases

ENSMUSG00000020739,
frount, MGI:3046173, NCBI:445007,
Nup85, OFF:Nup85, Pcnt1

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22704	174	CTG ...	LMR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Testis
18607	60	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
450183	36	GTG ...	VNL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1295425	201	ATT ...	IFS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
453755	30	CTG ...	LMP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
91064	108	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Testis
23751	108	CTG ...	LQD ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
1288078	60	CTG ...	LDD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
644565	33	ATG ...	MPF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
22546	162	CTG ...	LED ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Testis
1284104	66	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
91503	72	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1293915	141	AGG ...	RPE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
22830	204	GTG ...	VIF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Testis
20487	69	CTG ...	LRL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, R1E, Testis
21998	78	GTG ...	VEM ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
21071	150	CTG ...	LYG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
91199	111	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Testis
18923	63	CTG ...	LAL ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E, Testis
1290017	93	ATA ...	IET ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
23297	153	TTG ...	LAS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Testis
1290484	171	AAG ...	KYR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
770425	39	GTG ...	VVN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
19244	102	TTG ...	LAM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver

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