Transcript 10955 | MetamORF

Transcript

ID CARD

MetamORF ID

10955

ENSMUST00000022586

Name

Nufip1-201

Strand

Biotype

protein_coding

Start-end positions

76110891-76137379

CDS Start-stop positions

76110933-76134902

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:27275

Aliases

ENSMUSG00000022009,
MGI:1351474, NCBI:27275, Nufip,
Nufip1, OFF:Nufip1

Chr 14

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1308915	87	ATT ...	IHR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
785831	48	ATG ...	MQN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
675862	36	ATG ...	MRR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1308409	69	ATA ...	IPV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1179123	69	ATT ...	IAP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
676503	36	CTG ...	LKF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, R1E, v6-5
678849	72	GTG ...	VIP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, R1E
677815	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, R1E, v6-5
785245	33	GTG ...	VGL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
1307495	189	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1179479	78	ATA ...	IPV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1179249	87	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1351782	45	TTG ...	LNQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
785758	36	TTG ...	LQD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
785544	51	ATG ...	MMQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
785959	33	CTG ...	LIR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1139463	48	CTG ...	LEF ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
1309254	48	ATA ...	ING ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
681002	72	GTG ...	VIV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
678000	72	ATG ...	MFK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E
677601	138	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
1308837	42	AAG ...	KME ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
679527	42	ATG ...	MTH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
675325	63	GTG ...	VIV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, R1E
787131	42	CTG ...	LNR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1349974	153	ATG ...	MPR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1309589	90	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1308090	30	AGG ...	RCF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1306631	45	ATT ...	IRS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1351339	159	ATG ...	MMQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
10954	42	GTG ...	VGE ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
786134	54	ATG ...	MPE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1349739	264	CTG ...	LGV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307243	48	ATC ...	IQV ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1350575	33	ATG ...	MTH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E
674562	111	ATG ...	MFF ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
1350543	255	CTG ...	LGH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
680011	51	ATG ...	MRR ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
343857	60	CTG ...	LVE ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E
785367	60	CTG ...	LVN ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E, v6-5
678962	42	GTG ...	VHM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, v6-5
1349558	42	TTG ...	LNQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E
680884	57	GTG ...	VHM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, R1E, v6-5
1351463	156	ATG ...	MQN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
681044	81	GTG ...	VIP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, R1E
1308705	54	ATT ...	IAP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
787317	105	TTG ...	LQD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
353483	48	ATG ...	MEG ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
787042	51	GTG ...	VAW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
1178933	51	AAG ...	KME ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307309	33	AAG ...	KKG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1851363	39	ATG ...	MEG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
467399	48	GTG ...	VFA ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, R1E, Spleen_B_cell, v6-5
350690	57	GTG ...	VAL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
676204	54	GTG ...	VFD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
353797	66	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E

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