Transcript 296212

Transcript

ID CARD

MetamORF ID

296212

ENSMUST00000135631

Name

Nudcd3-203

Strand

Biotype

protein_coding

Start-end positions

6106458-6193476

CDS Start-stop positions

6108245-

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:209586

Aliases

AI427847,
BC024322, ENSMUSG00000053838, MGI:2144158,
mKIAA1068, NCBI:209586, Nudcd3,
OFF:Nudcd3

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
319962	159	GTG ...	VLL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, Brain, R1E, Spleen_B_cell
320199	198	ATG ...	MAW ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, Brain, R1E, Spleen_B_cell
296211	93	CTG ...	LTV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	Brain, R1E, Spleen_B_cell
312229	69	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	Brain, R1E, Spleen_B_cell
297460	48	TTG ...	LIT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain, R1E
320291	90	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, Brain, v6-5
303844	90	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
317782	174	TTG ...	LAS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, R1E, v6-5
313971	153	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, R1E, Spleen_B_cell
310539	78	GTG ...	VPS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	Brain, R1E, Spleen_B_cell
24226	48	TTG ...	LTT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	B_cell, Brain, R1E
319044	84	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	B_cell, Brain, v6-5
317172	132	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, R1E, Spleen_B_cell
308056	81	GTG ...	VEC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Brain
315169	156	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	R1E, Spleen_B_cell
316744	156	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, R1E, v6-5
304441	93	ATG ...	MLK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Brain

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