Transcript 419061

Transcript

ID CARD

MetamORF ID

419061

ENSMUST00000020578

Name

Nudcd2-201

Strand

Biotype

protein_coding

Start-end positions

40733667-40740046

CDS Start-stop positions

40733966-40739242

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:52653

Aliases

ENSMUSG00000020328,
MGI:1277103, NCBI:52653, Nudcd2,
OFF:Nudcd2

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
653673	132	TTG ...	LAS ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	sORF Upstream	3T3, E14, MEF, R1E, v6-5
450643	39	GTG ...	VPA ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Liver, MEF, v6-5
1596704	72	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1292267	72	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1286443	192	AGG ...	RAH ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
770446	54	TTG ...	LRD ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
643110	120	TTG ...	LRM ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, v6-5
445602	138	GTG ...	VDA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Spleen_B_cell, v6-5
975354	99	ATC ...	IAG ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
294986	54	ATG ...	MST ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, C2C12, E14, Liver, MEF, Neutrophil, v6-5
419168	57	AGG ...	REN ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
310059	69	ATG ...	MGS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, v6-5
647698	114	ATG ...	MCS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, v6-5
1285803	57	ATC ...	ISR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
642546	150	TTG ...	LHT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, v6-5
452860	207	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14
310625	30	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF
446516	69	TTG ...	LDV ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, E14, MEF, v6-5
641894	165	CTG ...	LKG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, MEF, R1E, v6-5
452628	57	GTG ...	VLS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, Liver, MEF, Neutrophil, v6-5
650032	90	TTG ...	LFR ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	sORF Upstream	3T3, E14, MEF, R1E, v6-5
450019	180	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14
452058	105	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, v6-5

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